User contributions for Anovak

7 July 2023

• 14:3514:35, 7 July 2023 diff hist −33‎ Phoenix WDL Tutorial ‎No edit summary
• 14:3314:33, 7 July 2023 diff hist −1‎ Phoenix WDL Tutorial ‎ →‎Testing at small scale single-machine

28 June 2023

• 21:4721:47, 28 June 2023 diff hist −21‎ Phoenix WDL Tutorial ‎No edit summary
• 21:4621:46, 28 June 2023 diff hist +25,315‎ N Phoenix WDL Tutorial ‎ Created page with "=Tutorial: Getting Started with WDL Workflows on Phoenix= Instead of giant shell scripts that only work on one grad student's laptop, modern, reusable bioinformatics experime..."
• 21:4621:46, 28 June 2023 diff hist +26‎ Genomics Institute Computing Information ‎ →‎Slurm at the Genomics Institute

27 June 2023

• 14:0814:08, 27 June 2023 diff hist +15‎ Slurm Tips for Toil ‎No edit summary

6 June 2023

• 15:0915:09, 6 June 2023 diff hist 0‎ Quick Start Instructions to Get Rolling with OpenStack ‎ →‎Launch a New Instance current
• 15:0615:06, 6 June 2023 diff hist +108‎ Quick Start Instructions to Get Rolling with OpenStack ‎ →‎Upload your SSH Public Key

5 June 2023

• 21:2921:29, 5 June 2023 diff hist +143‎ Slurm Tips for Toil ‎No edit summary

22 May 2023

• 19:3219:32, 22 May 2023 diff hist +120‎ GPU Resources ‎No edit summary
• 15:1915:19, 22 May 2023 diff hist +510‎ GPU Resources ‎No edit summary
• 15:1115:11, 22 May 2023 diff hist +260‎ GPU Resources ‎ →‎Running Containers in Singularity
• 15:0715:07, 22 May 2023 diff hist −21‎ GPU Resources ‎ →‎Running Containers in Singularity
• 15:0715:07, 22 May 2023 diff hist +792‎ GPU Resources ‎ →‎Running Containers in Docker: Note how to point Docker at the right GPUs.

18 May 2023

• 21:4321:43, 18 May 2023 diff hist +133‎ GPU Resources ‎ →‎Running Containers in Docker
• 21:3921:39, 18 May 2023 diff hist +167‎ GPU Resources ‎No edit summary

15 May 2023

• 21:4321:43, 15 May 2023 diff hist +313‎ Slurm Tips for vg ‎ →‎Misc Tips
• 21:4021:40, 15 May 2023 diff hist +450‎ Slurm Tips for vg ‎No edit summary
• 21:3421:34, 15 May 2023 diff hist +1,777‎ N Slurm Tips for Toil ‎ Created page with "Here are some tips for running Toil workflows on the Phoenix Slurm cluster. Mostly you might want to run WDL workflows, but you can use some of these for other workflows like..."
• 21:3321:33, 15 May 2023 diff hist +1,350‎ N Slurm Tips for vg ‎ Created page with "This page explains how to set up a development environment for [https://github.com/vgteam/vg vg] on the Phoenix cluster. 1. Make yourself a user directory under '''/private/g..."
• 20:0020:00, 15 May 2023 diff hist 0‎ Genomics Institute Computing Information ‎ →‎Slurm at the Genomics Institute
• 20:0020:00, 15 May 2023 diff hist +48‎ Genomics Institute Computing Information ‎ →‎Slurm at the Genomics Institute
• 19:5919:59, 15 May 2023 diff hist +11‎ Quick Reference Guide ‎ →‎General Commands current
• 19:5519:55, 15 May 2023 diff hist +4‎ GPU Resources ‎ →‎Running Containers in Docker
• 19:4519:45, 15 May 2023 diff hist +68‎ GPU Resources ‎ →‎Running Containers in Slurm
• 19:3719:37, 15 May 2023 diff hist +38‎ GPU Resources ‎ →‎Running Containers in Docker
• 19:0719:07, 15 May 2023 diff hist −9‎ GPU Resources ‎No edit summary
• 18:5418:54, 15 May 2023 diff hist +325‎ GPU Resources ‎ →‎Containerized GPU Workloads
• 18:5218:52, 15 May 2023 diff hist +779‎ GPU Resources ‎ Divide up by method
• 18:4418:44, 15 May 2023 diff hist +2,908‎ GPU Resources ‎ Explain how to actually use GPUs and what won't work

11 May 2023

• 15:5215:52, 11 May 2023 diff hist +63‎ Overview of using Slurm ‎ Cross-link to quick reference

22 July 2022

• 23:5323:53, 22 July 2022 diff hist +2‎ Overview of Getting and Using an AWS IAM Account ‎ Fix link
• 23:5323:53, 22 July 2022 diff hist +131‎ Overview of Getting and Using an AWS IAM Account ‎ →‎Switching Roles into Another AWS Account: Note where to get the name.

10 March 2022

• 20:5920:59, 10 March 2022 diff hist +95‎ AWS S3 Lifecycle Management ‎ →‎Restoring Objects current

9 March 2022

• 19:5819:58, 9 March 2022 diff hist +324‎ AWS S3 Lifecycle Management ‎ →‎Restoring Objects
• 19:4819:48, 9 March 2022 diff hist +1,070‎ AWS S3 Lifecycle Management ‎ Explain how to restore

26 October 2020

• 16:2916:29, 26 October 2020 diff hist +21‎ Overview of Getting and Using an AWS IAM Account ‎ I changed the example email in one section so now I have to change it everywhere
• 16:2316:23, 26 October 2020 diff hist +887‎ Overview of Getting and Using an AWS IAM Account ‎ →‎API Access and Secret Keys: Show how you have to have the config for Toil to work

23 June 2020

• 23:2323:23, 23 June 2020 diff hist +1,869‎ Computational Genomics Kubernetes Installation ‎ Suggest --no-progress and talk about AWS secrets

13 March 2020

• 22:4922:49, 13 March 2020 diff hist +3,031‎ Computational Genomics Kubernetes Installation ‎ Talk about perf and NUMA issues when profiling
• 22:2722:27, 13 March 2020 diff hist +1,986‎ Computational Genomics Kubernetes Installation ‎No edit summary
• 22:1522:15, 13 March 2020 diff hist +116‎ Computational Genomics Kubernetes Installation ‎ Note that limits can replace requests if unspecified.