Genomics Institute Computing Information

Welcome to the Genomic Institute Computing Information Repository! Browse the below topics for help in the area you are curious about.

GI Public Computing Environment

• How to access the public servers

GI Firewalled Computing Environment (PRISM)

• Access to the Firewalled Compute Servers

VPN Access

• Requirement for users to get GI VPN access

NIH dbGaP Access Requirements

• Requirements for dbGaP Access

giCloud Openstack

• Overview of giCloud in the Genomics Institute
• Quick Start Instructions to Get Rolling with OpenStack

Amazon Web Services Information

• Overview of Getting and Using an AWS IAM Account
• AWS Account List and Numbers
• AWS Shared Bucket Usage Graphs
• AWS Best Practices
• AWS S3 Lifecycle Management

Slurm at the Genomics Institute

• Overview of using Slurm
• Annotated Slurm Script
• Job Arrays
• GPU Resources
• Quick Reference Guide

Kubernetes Information

• Computational Genomics Kubernetes Installation
• Undiagnosed Disease Project Kubernetes Installation

Problems or technical support

If you have any problems with the GI computing environment, please send an email to cluster-admin@soe.ucsc.edu