View source for Genomics Institute Computing Information

Welcome to the Genomic Institute Computing Information Repository!  Browse the below topics for help in the area you are curious about.

== GI Public Computing Environment ==
*[[How to access the public servers]]

== GI Firewalled Computing Environment (PRISM) ==
*[[Access to the Firewalled Compute Servers]]
*[[Firewalled Computing Resources Overview]]
*[[Firewalled Environment Storage Overview]]
*[[Firewalled User Account and Storage Cost]]
*[[Grafana Performance Metrics]]
*[[Visual Studio Code (vscode) Configuration Tweaks]]

==VPN Access==
*[[Requirement for users to get GI VPN access]]

== NIH dbGaP Access Requirements ==
*[[Requirements for dbGaP Access]]

== giCloud Openstack ==
*[[Overview of giCloud in the Genomics Institute]]
*[[Quick Start Instructions to Get Rolling with OpenStack]]

== Amazon Web Services Information ==
*[[Overview of Getting and Using an AWS IAM Account]]
*[[AWS Account List and Numbers]]
*[[AWS Shared Bucket Usage Graphs]]
*[[AWS Best Practices]]
*[[AWS S3 Lifecycle Management]]

== Slurm at the Genomics Institute ==
*[[Overview of using Slurm]]
*[[Cluster Etiquette]]
*[[Annotated Slurm Script]]
*[[Job Arrays]]
*[[GPU Resources]]
*[[Quick Reference Guide]]
*[[Slurm Queues (Partitions) and Resource Management]]
*[[Slurm Tips for vg]]
*[[Slurm Tips for Toil]]
*[[Using Docker under Slurm]]
*[[Phoenix WDL Tutorial]]

==General Docker Information==
*[[Running a Container as a non-root User]]

== Problems or technical support ==

If you have any problems with the GI computing environment, please send an email to '''cluster-admin@soe.ucsc.edu'''