UCSC Genomics Institute Computing Infrastructure Information wikiGIdb http://giwiki.gi.ucsc.edu/index.php?title=Genomics_Institute_Computing_Information MediaWiki 1.40.0 first-letter Media Special Talk User User talk UCSC Genomics Institute Computing Infrastructure Information UCSC Genomics Institute Computing Infrastructure Information talk File File talk MediaWiki MediaWiki talk Template Template talk Help Help talk Category Category talk 0 6 792 774 2026-05-29T21:24:35Z Weiler 3 /* GI Firewalled Computing Environment (PRISM) */ 792 wikitext text/x-wiki Welcome to the Genomic Institute Computing Information Repository! Browse the below topics for help in the area you are curious about. == GI Public Computing Environment == *[[How to access the public servers]] *[[Resetting your Public UNIX Password]] == GI Firewalled Computing Environment (PRISM) == *[[Access to the Firewalled Compute Servers]] *[[Firewalled Computing Resources Overview]] *[[Firewalled Environment Storage Overview]] *[[Firewalled User Account and Storage Cost]] *[[Grafana Performance Metrics]] *[[Visual Studio Code (vscode) Configuration Tweaks]] *[http://logserv.gi.ucsc.edu/cgi-bin/private-groups.cgi '''/private/groups''' Data Usage Graphs] *[http://logserv.gi.ucsc.edu/cgi-bin/private-warm-archive.cgi '''/private/warm-archive''' Data Usage Graphs] *[[Resetting your VPN/PRISM Password]] ==VPN Access== *[[Requirement for users to get GI VPN access]] *[[Setting Up The VPN on MacOS]] *[[Setting Up The VPN on Windows]] *[[Setting Up The VPN on Linux]] *[[Multi Factor Authentication (MFA) Frequently Asked Questions]] *[[Duo Pushes Aren't Being Sent to My Phone!]] == NIH dbGaP Access Requirements == *[[Requirements for dbGaP Access]] == giCloud Openstack == *[[Overview of giCloud in the Genomics Institute]] *[[Quick Start Instructions to Get Rolling with OpenStack]] == Amazon Web Services Information == *[[Overview of Getting and Using an AWS IAM Account]] *[[AWS Account List and Numbers]] *[[AWS Shared Bucket Usage Graphs]] *[[AWS Best Practices]] *[[AWS S3 Lifecycle Management]] == JupyterHub Notebooks Spawned via Slurm == *[[Access the JupyterHub Slurm Server]] *[[Create a Jupyter Virtual Environment]] *[[Change Default File Browser Directory]] == Slurm at the Genomics Institute == *[[Overview of using Slurm]] *[[Slurm Best Practices]] *[[Cluster Etiquette]] *[[Annotated Slurm Script]] *[[Job Arrays]] *[[GPU Resources]] *[[Quick Reference Guide]] *[[Convenient Slurm Commands]] *[[Slurm Queues (Partitions) and Resource Management]] *[[Slurm Tips for vg]] *[[Slurm Tips for Toil]] *[[Using Docker under Slurm]] *[[Phoenix WDL Tutorial]] *[[Slurm Insights Dashboard]] ==General Docker Information== *[[Running a Container as a non-root User]] == Problems or technical support == If you have any questions or problems with the GI computing environment, please send an email to '''cluster-admin@soe.ucsc.edu''' 13mokzg8fq9g2j09g5y1u1rqgw7inqh