User contributions for Anovak
From UCSC Genomics Institute Computing Infrastructure Information
4 December 2024
- 14:4514:45, 4 December 2024 diff hist +1,067 Using Docker under Slurm Explain how to pass the right GPUs current
11 October 2024
- 17:0517:05, 11 October 2024 diff hist +766 Slurm Tips for vg →Misc Tips: Discourage interactive shells current
16 July 2024
- 20:4020:40, 16 July 2024 diff hist +11 Phoenix WDL Tutorial →Configuring Toil for Phoenix: Provide Julian's preferred storage paths, note Ceph bug and default home directory image storage. current
- 20:2420:24, 16 July 2024 diff hist −75 Phoenix WDL Tutorial →Frequently Asked Questions: Note there's no more XDG_RUNTIME_DIR warning.
- 20:2020:20, 16 July 2024 diff hist +322 Phoenix WDL Tutorial →Reading the Log: Explain --writeLogs
- 20:1620:16, 16 July 2024 diff hist +762 Phoenix WDL Tutorial →Reproducing Problems: Explain new debug-job features
- 20:0620:06, 16 July 2024 diff hist +50 Phoenix WDL Tutorial →Connecting to Phoenix: Use emerald login node
28 June 2024
- 16:3216:32, 28 June 2024 diff hist +114 GPU Resources Add partition and time current
25 March 2024
- 20:2920:29, 25 March 2024 diff hist −1 Slurm Queues (Partitions) and Resource Management →My job is not running but I want it to be running!
21 March 2024
6 March 2024
- 17:2417:24, 6 March 2024 diff hist +213 Cluster Etiquette Link to the storage visualization
16 February 2024
- 19:0819:08, 16 February 2024 diff hist −22 Slurm Tips for Toil No edit summary current
13 February 2024
- 23:0123:01, 13 February 2024 diff hist +700 Phoenix WDL Tutorial →Debugging Workflows: Explain restarting
6 February 2024
- 15:0915:09, 6 February 2024 diff hist −33 Phoenix WDL Tutorial →Reading the Log: Update with new examples of the new log logging format.
31 January 2024
- 15:2815:28, 31 January 2024 diff hist +239 Phoenix WDL Tutorial Turn of caching as is demanded
- 15:2415:24, 31 January 2024 diff hist +7 Phoenix WDL Tutorial Fix groups directory path
22 January 2024
- 16:4416:44, 22 January 2024 diff hist +1,870 Slurm Queues (Partitions) and Resource Management Document how the priority system works and how to make the scheduler account for its choices
5 January 2024
- 15:3515:35, 5 January 2024 diff hist +4 Slurm Tips for vg →Setting Up
- 15:1215:12, 5 January 2024 diff hist +85 Slurm Queues (Partitions) and Resource Management →Partitions
- 15:1115:11, 5 January 2024 diff hist +51 Slurm Tips for vg No edit summary
7 December 2023
- 23:0023:00, 7 December 2023 diff hist +36 Phoenix WDL Tutorial Show the safer export syntax
1 December 2023
- 16:1416:14, 1 December 2023 diff hist +3 Phoenix WDL Tutorial →Testing at small scale single-machine
- 16:1016:10, 1 December 2023 diff hist +485 Phoenix WDL Tutorial Show using the partitions
- 16:0216:02, 1 December 2023 diff hist −33 Phoenix WDL Tutorial →Configuring Toil for Phoenix Tag: Manual revert
20 November 2023
- 21:5421:54, 20 November 2023 diff hist +119 Slurm Tips for Toil Show how to install with extras and a branch
9 November 2023
27 October 2023
- 22:3222:32, 27 October 2023 diff hist +389 Phoenix WDL Tutorial →Configuring Toil for Phoenix: Complain about file locking
23 October 2023
- 20:2420:24, 23 October 2023 diff hist +494 Phoenix WDL Tutorial Cache Singularity stuff outside the size-limited home directories.
20 October 2023
- 21:2121:21, 20 October 2023 diff hist +687 Phoenix WDL Tutorial Remind people where the data needs to live.
10 August 2023
- 15:2715:27, 10 August 2023 diff hist +157 Phoenix WDL Tutorial No edit summary
- 15:2415:24, 10 August 2023 diff hist +32 Phoenix WDL Tutorial →Toil said it was Redirecting logging somewhere, but I can't find that file!
- 15:2115:21, 10 August 2023 diff hist −1 Phoenix WDL Tutorial →Writing Tasks
- 15:2115:21, 10 August 2023 diff hist +168 Phoenix WDL Tutorial →Writing the file
- 15:1715:17, 10 August 2023 diff hist −6 Phoenix WDL Tutorial No edit summary
- 15:1415:14, 10 August 2023 diff hist −6 Phoenix WDL Tutorial →Frequently Asked Questions
- 15:1315:13, 10 August 2023 diff hist −1 Phoenix WDL Tutorial →Reproducing Problems
- 15:1115:11, 10 August 2023 diff hist +2 Phoenix WDL Tutorial →Writing the file
- 15:1115:11, 10 August 2023 diff hist +34 Phoenix WDL Tutorial →Writing the file
- 15:0915:09, 10 August 2023 diff hist +1 Phoenix WDL Tutorial →Writing your own workflow
- 15:0715:07, 10 August 2023 diff hist +2 Phoenix WDL Tutorial →Configuring Toil for Phoenix
- 15:0615:06, 10 August 2023 diff hist 0 Phoenix WDL Tutorial →Configuring Toil for Phoenix
20 July 2023
- 13:5313:53, 20 July 2023 diff hist +581 Phoenix WDL Tutorial →Debugging Workflows
- 13:4813:48, 20 July 2023 diff hist +262 Phoenix WDL Tutorial →Installing Toil with WDL support
17 July 2023
- 15:2715:27, 17 July 2023 diff hist 0 Phoenix WDL Tutorial →More Ways of Finding Files
- 15:2515:25, 17 July 2023 diff hist +4,818 Phoenix WDL Tutorial →Debugging Workflows
- 15:0615:06, 17 July 2023 diff hist +212 Phoenix WDL Tutorial →Frequently Asked Questions
11 July 2023
- 16:5416:54, 11 July 2023 diff hist −1 Phoenix WDL Tutorial →Installing Toil with WDL support
- 13:5113:51, 11 July 2023 diff hist +495 Phoenix WDL Tutorial →Debugging Workflows
- 13:4913:49, 11 July 2023 diff hist +553 Phoenix WDL Tutorial No edit summary
7 July 2023
- 14:3614:36, 7 July 2023 diff hist −11 Phoenix WDL Tutorial No edit summary
