Genomics Institute Computing Information: Difference between revisions
From UCSC Genomics Institute Computing Infrastructure Information
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Welcome to the Genomic Institute Computing Information Repository! Browse the below topics for help in the area you are curious about. | Welcome to the Genomic Institute Computing Information Repository! Browse the below topics for help in the area you are curious about. | ||
==GI Public Computing Environment== | == GI Public Computing Environment == | ||
*[[How to access the public servers]] | *[[How to access the public servers]] | ||
==GI Firewalled Computing Environment (PRISM)== | == GI Firewalled Computing Environment (PRISM) == | ||
*[[Access to the Firewalled Compute Servers]] | *[[Access to the Firewalled Compute Servers]] | ||
*[[Firewalled Computing Resources Overview]] | |||
*[[Firewalled Environment Storage Overview]] | |||
*[[Firewalled User Account and Storage Cost]] | |||
*[[Grafana Performance Metrics]] | |||
*[[Visual Studio Code (vscode) Configuration Tweaks]] | |||
*[http://logserv.gi.ucsc.edu/cgi-bin/private-groups.cgi '''/private/groups''' Data Usage Graphs] | |||
==VPN Access== | ==VPN Access== | ||
| Line 12: | Line 18: | ||
== NIH dbGaP Access Requirements == | == NIH dbGaP Access Requirements == | ||
*[[Requirements for dbGaP Access]] | *[[Requirements for dbGaP Access]] | ||
== giCloud Openstack == | == giCloud Openstack == | ||
| Line 27: | Line 32: | ||
== Slurm at the Genomics Institute == | == Slurm at the Genomics Institute == | ||
*[[Overview of using Slurm]] | *[[Overview of using Slurm]] | ||
*[[Cluster Etiquette]] | |||
*[[Annotated Slurm Script]] | |||
*[[Job Arrays]] | |||
*[[GPU Resources]] | |||
*[[Quick Reference Guide]] | |||
*[[Convenient Slurm Commands]] | |||
*[[Slurm Queues (Partitions) and Resource Management]] | |||
*[[Slurm Tips for vg]] | |||
*[[Slurm Tips for Toil]] | |||
*[[Using Docker under Slurm]] | |||
*[[Phoenix WDL Tutorial]] | |||
== | ==General Docker Information== | ||
*[[ | *[[Running a Container as a non-root User]] | ||
== Problems or technical support == | == Problems or technical support == | ||
If you have any problems with the GI computing environment, please send an email to '''cluster-admin@soe.ucsc.edu''' | If you have any problems with the GI computing environment, please send an email to '''cluster-admin@soe.ucsc.edu''' | ||
Latest revision as of 16:35, 28 September 2024
Welcome to the Genomic Institute Computing Information Repository! Browse the below topics for help in the area you are curious about.
GI Public Computing Environment
GI Firewalled Computing Environment (PRISM)
- Access to the Firewalled Compute Servers
- Firewalled Computing Resources Overview
- Firewalled Environment Storage Overview
- Firewalled User Account and Storage Cost
- Grafana Performance Metrics
- Visual Studio Code (vscode) Configuration Tweaks
- /private/groups Data Usage Graphs
VPN Access
NIH dbGaP Access Requirements
giCloud Openstack
- Overview of giCloud in the Genomics Institute
- Quick Start Instructions to Get Rolling with OpenStack
Amazon Web Services Information
- Overview of Getting and Using an AWS IAM Account
- AWS Account List and Numbers
- AWS Shared Bucket Usage Graphs
- AWS Best Practices
- AWS S3 Lifecycle Management
Slurm at the Genomics Institute
- Overview of using Slurm
- Cluster Etiquette
- Annotated Slurm Script
- Job Arrays
- GPU Resources
- Quick Reference Guide
- Convenient Slurm Commands
- Slurm Queues (Partitions) and Resource Management
- Slurm Tips for vg
- Slurm Tips for Toil
- Using Docker under Slurm
- Phoenix WDL Tutorial
General Docker Information
Problems or technical support
If you have any problems with the GI computing environment, please send an email to cluster-admin@soe.ucsc.edu
