Genomics Institute Computing Information: Difference between revisions
From UCSC Genomics Institute Computing Infrastructure Information
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== GI Public Computing Environment == | == GI Public Computing Environment == | ||
*[[How to access the public servers]] | *[[How to access the public servers]] | ||
*[[Resetting your Public UNIX Password]] | |||
== GI Firewalled Computing Environment (PRISM) == | == GI Firewalled Computing Environment (PRISM) == | ||
| Line 16: | Line 17: | ||
==VPN Access== | ==VPN Access== | ||
*[[Requirement for users to get GI VPN access]] | *[[Requirement for users to get GI VPN access]] | ||
*[[Setting Up The VPN on | *[[Setting Up The VPN on MacOS]] | ||
*[[Setting Up The VPN on Windows]] | |||
*[[Setting Up The VPN on Linux]] | |||
*[[Multi Factor Authentication (MFA) Frequently Asked Questions]] | |||
*[[Duo Pushes Aren't Being Sent to My Phone!]] | |||
== NIH dbGaP Access Requirements == | == NIH dbGaP Access Requirements == | ||
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== Slurm at the Genomics Institute == | == Slurm at the Genomics Institute == | ||
*[[Overview of using Slurm]] | *[[Overview of using Slurm]] | ||
*[[Slurm Best Practices]] | |||
*[[Cluster Etiquette]] | *[[Cluster Etiquette]] | ||
*[[Annotated Slurm Script]] | *[[Annotated Slurm Script]] | ||
| Line 45: | Line 51: | ||
*[[Using Docker under Slurm]] | *[[Using Docker under Slurm]] | ||
*[[Phoenix WDL Tutorial]] | *[[Phoenix WDL Tutorial]] | ||
*[[Slurm Insights Dashboard]] | |||
==General Docker Information== | ==General Docker Information== | ||
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== Problems or technical support == | == Problems or technical support == | ||
If you have any problems with the GI computing environment, please send an email to '''cluster-admin@soe.ucsc.edu''' | If you have any questions or problems with the GI computing environment, please send an email to '''cluster-admin@soe.ucsc.edu''' | ||
Latest revision as of 13:40, 31 March 2026
Welcome to the Genomic Institute Computing Information Repository! Browse the below topics for help in the area you are curious about.
GI Public Computing Environment
GI Firewalled Computing Environment (PRISM)
- Access to the Firewalled Compute Servers
- Firewalled Computing Resources Overview
- Firewalled Environment Storage Overview
- Firewalled User Account and Storage Cost
- Grafana Performance Metrics
- Visual Studio Code (vscode) Configuration Tweaks
- /private/groups Data Usage Graphs
- Resetting your VPN/PRISM Password
VPN Access
- Requirement for users to get GI VPN access
- Setting Up The VPN on MacOS
- Setting Up The VPN on Windows
- Setting Up The VPN on Linux
- Multi Factor Authentication (MFA) Frequently Asked Questions
- Duo Pushes Aren't Being Sent to My Phone!
NIH dbGaP Access Requirements
giCloud Openstack
- Overview of giCloud in the Genomics Institute
- Quick Start Instructions to Get Rolling with OpenStack
Amazon Web Services Information
- Overview of Getting and Using an AWS IAM Account
- AWS Account List and Numbers
- AWS Shared Bucket Usage Graphs
- AWS Best Practices
- AWS S3 Lifecycle Management
Slurm at the Genomics Institute
- Overview of using Slurm
- Slurm Best Practices
- Cluster Etiquette
- Annotated Slurm Script
- Job Arrays
- GPU Resources
- Quick Reference Guide
- Convenient Slurm Commands
- Slurm Queues (Partitions) and Resource Management
- Slurm Tips for vg
- Slurm Tips for Toil
- Using Docker under Slurm
- Phoenix WDL Tutorial
- Slurm Insights Dashboard
General Docker Information
Problems or technical support
If you have any questions or problems with the GI computing environment, please send an email to cluster-admin@soe.ucsc.edu
