Genomics Institute Computing Information: Difference between revisions
From UCSC Genomics Institute Computing Infrastructure Information
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*[[Visual Studio Code (vscode) Configuration Tweaks]] | *[[Visual Studio Code (vscode) Configuration Tweaks]] | ||
*[http://logserv.gi.ucsc.edu/cgi-bin/private-groups.cgi '''/private/groups''' Data Usage Graphs] | *[http://logserv.gi.ucsc.edu/cgi-bin/private-groups.cgi '''/private/groups''' Data Usage Graphs] | ||
*[http://logserv.gi.ucsc.edu/cgi-bin/private-warm-archive.cgi '''/private/warm-archive''' Data Usage Graphs] | |||
*[[Resetting your VPN/PRISM Password]] | *[[Resetting your VPN/PRISM Password]] | ||
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*[[Access the JupyterHub Slurm Server]] | *[[Access the JupyterHub Slurm Server]] | ||
*[[Create a Jupyter Virtual Environment]] | *[[Create a Jupyter Virtual Environment]] | ||
*[[Change Default File Browser Directory]] | |||
== Slurm at the Genomics Institute == | == Slurm at the Genomics Institute == | ||
Latest revision as of 14:24, 29 May 2026
Welcome to the Genomic Institute Computing Information Repository! Browse the below topics for help in the area you are curious about.
GI Public Computing Environment
GI Firewalled Computing Environment (PRISM)
- Access to the Firewalled Compute Servers
- Firewalled Computing Resources Overview
- Firewalled Environment Storage Overview
- Firewalled User Account and Storage Cost
- Grafana Performance Metrics
- Visual Studio Code (vscode) Configuration Tweaks
- /private/groups Data Usage Graphs
- /private/warm-archive Data Usage Graphs
- Resetting your VPN/PRISM Password
VPN Access
- Requirement for users to get GI VPN access
- Setting Up The VPN on MacOS
- Setting Up The VPN on Windows
- Setting Up The VPN on Linux
- Multi Factor Authentication (MFA) Frequently Asked Questions
- Duo Pushes Aren't Being Sent to My Phone!
NIH dbGaP Access Requirements
giCloud Openstack
- Overview of giCloud in the Genomics Institute
- Quick Start Instructions to Get Rolling with OpenStack
Amazon Web Services Information
- Overview of Getting and Using an AWS IAM Account
- AWS Account List and Numbers
- AWS Shared Bucket Usage Graphs
- AWS Best Practices
- AWS S3 Lifecycle Management
JupyterHub Notebooks Spawned via Slurm
- Access the JupyterHub Slurm Server
- Create a Jupyter Virtual Environment
- Change Default File Browser Directory
Slurm at the Genomics Institute
- Overview of using Slurm
- Slurm Best Practices
- Cluster Etiquette
- Annotated Slurm Script
- Job Arrays
- GPU Resources
- Quick Reference Guide
- Convenient Slurm Commands
- Slurm Queues (Partitions) and Resource Management
- Slurm Tips for vg
- Slurm Tips for Toil
- Using Docker under Slurm
- Phoenix WDL Tutorial
- Slurm Insights Dashboard
General Docker Information
Problems or technical support
If you have any questions or problems with the GI computing environment, please send an email to cluster-admin@soe.ucsc.edu
